Re: [AMBER] Stopping sander in production phase. Why?

From: Atila Petrosian <atila.petrosian.gmail.com>
Date: Fri, 23 Oct 2015 19:18:54 +0330

Dear Jason,

> It could be that the job was simply killed.​
> It could be a problem during cleanup of sander.

How to avoid this job killing or cleanup process?

> ​Did you ask for more steps than this?

Each of production phase is 5 ns (2500000 steps).

My main question in my last case in which

out file: NSTEP = 867500

info file: NSTEP = 2500000

is that can I be sure that MD simulation was ended?

The size of mdcrd file seems low. Lower than the size of a mdcrd file with
2500000 steps.

Best,
Atila
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Received on Fri Oct 23 2015 - 09:00:04 PDT
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