that is what exactly I have done
I uninstalled AMBER and replaced AmberTools13 with AmberTool15
then I did " make clean " and I reinstalled AMBER12 along side with
AmberTools15 together.
and by the way, when I ran my command, parmed started to work
_____
__...---'-----`---...__
_===============================
______________,/' `---..._______...---'
(______________). . ,--'
/ /.---' `. /
'--------_ - - - - _/ P A R M E D
`~~~~~~~~'
ParmEd: a Parameter file Editor
but it stopped then due to this error I sent before .
I think that is saying " ParmEd can run .
Regards
On Mon, Oct 26, 2015 at 4:21 PM, Jason Swails <jason.swails.gmail.com>
wrote:
> On Mon, Oct 26, 2015 at 10:01 AM, Hadeer ELHabashy <
> hadeer.elhabashi.gmail.com> wrote:
>
> > same directory of $AMBERHOME
> >
>
> You can't install Amber 12 and AmberTools 15 in the same place and expect
> it to work (I have no idea *what* to expect in this situation). See
> http://jswails.wikidot.com/installing-ambertools-14-and-older-amber for
> more instructions on how to get Amber 12 and AmberTools 15 to coexist
> peacefully.
>
> Note that since you unpacked AmberTools 15 into your amber12 directory, you
> have effectively polluted and destroyed AmberTools 13 (which Amber 12 needs
> in order to build). You may have to delete the whole directory and
> reinstall completely if you ever need to recompile pmemd.
>
> Good luck,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Oct 26 2015 - 07:30:08 PDT
