Re: [AMBER] How can amber differentiate between terminal Oxygens

From: Hadeer ELHabashy <hadeer.elhabashi.gmail.com>
Date: Mon, 26 Oct 2015 16:01:37 +0200

same directory of $AMBERHOME

On Mon, Oct 26, 2015 at 3:59 PM, Jason Swails <jason.swails.gmail.com>
wrote:

> Where is AmberTools 15 installed?
>
> On Mon, Oct 26, 2015 at 9:37 AM, Hadeer ELHabashy <
> hadeer.elhabashi.gmail.com> wrote:
>
> > echo $PYTHONPATH
> > amber12/lib/python2.7/site-packages: amber12/lib/python2.7/site-packages
> > which parmed.py
> > amber12/bin/parmed.py
> > echo $AMBERHOME
> > home/software/amber12
> >
> >
> >
> > On Mon, Oct 26, 2015 at 3:09 PM, Jason Swails <jason.swails.gmail.com>
> > wrote:
> >
> > > On Mon, Oct 26, 2015 at 8:58 AM, Hadeer ELHabashy <
> > > hadeer.elhabashi.gmail.com> wrote:
> > >
> > > > Dear Dr.Jason
> > > >
> > > > I have Amber12 but AmberTools15
> > > > I ran the "make test.parmed", it was done successfully !
> > > > No, I did not install any other version of ParmEd .
> > > >
> > > > I tried one more time and I am still having this error
> > > >
> > >
> > > ​What is the output of the following commands:
> > >
> > > echo $PYTHONPATH
> > >
> > > which parmed.py
> > >
> > > echo $AMBERHOME
> > >
> > > ?
> > >
> > > --
> > > Jason M. Swails
> > > BioMaPS,
> > > Rutgers University
> > > Postdoctoral Researcher
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Oct 26 2015 - 07:30:04 PDT
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