Re: [AMBER] How can amber differentiate between terminal Oxygens

From: Jason Swails <jason.swails.gmail.com>
Date: Mon, 26 Oct 2015 09:59:49 -0400

Where is AmberTools 15 installed?

On Mon, Oct 26, 2015 at 9:37 AM, Hadeer ELHabashy <
hadeer.elhabashi.gmail.com> wrote:

> echo $PYTHONPATH
> amber12/lib/python2.7/site-packages: amber12/lib/python2.7/site-packages
> which parmed.py
> amber12/bin/parmed.py
> echo $AMBERHOME
> home/software/amber12
>
>
>
> On Mon, Oct 26, 2015 at 3:09 PM, Jason Swails <jason.swails.gmail.com>
> wrote:
>
> > On Mon, Oct 26, 2015 at 8:58 AM, Hadeer ELHabashy <
> > hadeer.elhabashi.gmail.com> wrote:
> >
> > > Dear Dr.Jason
> > >
> > > I have Amber12 but AmberTools15
> > > I ran the "make test.parmed", it was done successfully !
> > > No, I did not install any other version of ParmEd .
> > >
> > > I tried one more time and I am still having this error
> > >
> >
> > ​What is the output of the following commands:
> >
> > echo $PYTHONPATH
> >
> > which parmed.py
> >
> > echo $AMBERHOME
> >
> > ?
> >
> > --
> > Jason M. Swails
> > BioMaPS,
> > Rutgers University
> > Postdoctoral Researcher
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>



-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Mon Oct 26 2015 - 07:30:03 PDT
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