Dear AMBER users
Very recently, we have purchased AMBER14. I downloaded it and followed all
instructions given in the manual to install AMBER14 on CentOS release 6.5 .
During testing AMBER14 serial version, we got the following python-related
error:
--------------
make test
(cd AmberTools/test && make test)
make[1]: Entering directory `/export/apps/amber14/AmberTools/test'
./test_at_serial.sh
/export/apps/amber14/lib/python2.6/site-packages/chemistry/openmm/reporters.py:743:
Warning: 'with' will become a reserved keyword in Python 2.6
Traceback (most recent call last):
File "<stdin>", line 18, in <module>
File
"/export/apps/amber14/lib/python2.6/site-packages/chemistry/__init__.py",
line 22, in <module>
from chemistry import openmm
File
"/export/apps/amber14/lib/python2.6/site-packages/chemistry/openmm/__init__.py",
line 5, in <module>
from chemistry.openmm.reporters import (
File
"/export/apps/amber14/lib/python2.6/site-packages/chemistry/openmm/reporters.py",
line 743
with open(self.fname, 'w') as f:
^
SyntaxError: invalid syntax
make[1]: *** [test] Error 1
make[1]: Leaving directory `/export/apps/amber14/AmberTools/test'
make: *** [test.serial] Error 2
----------------------------------------
Our python version is:
Python 2.6.6 (r266:84292, Jan 22 2014, 09:42:36)
Is there a problem in using python2.6 with AMBER?
Any kind of support will be highly appreciated.
Thanks in advance
Sincerely;
M. Ibrahim
--
Mahmoud A. A. Ibrahim
Head of CompChem Lab, Chemistry Department,
Faculty of Science, Minia University, Minia 61519, Egypt.
Email: m.ibrahim.compchem.net
m.ibrahim.mu.edu.eg
Website: www.compchem.net
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Received on Fri Oct 30 2015 - 12:00:03 PDT
