[AMBER] ante-MMPBSA question

From: Mohammad Salem <mohammad.alaraby.gmail.com>
Date: Mon, 26 Oct 2015 16:18:25 -0600

Hi all,

I have a topology file for a solvated complex and I want to strip off the solvent. The protein residues are those from 1-226, but I don’t know how to use negation in terminal. (I want to do something like !(:1-226) ).

ante-MMPBSA.py -p prmtop -c complex.top -r receptor.top -l ligand.top -s !(:1-226)

any easy workarounds?

thanks


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Received on Mon Oct 26 2015 - 15:30:03 PDT
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