I guess you can use cpptraj:
http://ambermd.org/tutorials/analysis/tutorial0/
You can check amber 15 manual for further info.
Hai
On Tue, Oct 20, 2015 at 2:01 PM, Krantzman, Kristin D <KrantzmanK.cofc.edu>
wrote:
> Greetings,
> I have performed a md simulation of a protein adsorbed to a graphene
> surface with pmemd. I would like to calculate the distance between the
> protein and the graphene surface. Could you please guide me on how to
> proceed? Thank you in advance.
> Best, Kristin D. Krantzman
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Oct 20 2015 - 11:30:04 PDT
