Re: [AMBER] how to convert mdcrd to NetCDF trajectory file?

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Thu, 29 Oct 2015 08:52:50 -0600

On Sun, Oct 25, 2015 at 11:16 AM, shahab shariati
<shahab.shariati.gmail.com> wrote:
> Now, I want to convert my 4 mdcrd trajectory files to 1 netcdf trajectory
> file.
> How to do that?

This can be done with cpptraj from the command line:

cpptraj -p myparm.parm7 -y traj1.crd -y traj2.crd -y traj3.crd -y
traj4.crd -x combined.nc

-Dan

>
> Can I view a netcdf trajectory file using VMD?
>
> Any help will highly appreciated.
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber



-- 
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Oct 29 2015 - 08:00:06 PDT
Custom Search