It's unclear what you mean by "trace the specific structure" - do you mean
you want to visualize the water and bridged residues? The bridge.dat file
should contain all the info you need to look at that.
-Dan
On Monday, October 26, 2015, Lara rajam <lara.4884.gmail.com> wrote:
> Dear Amber
>
> I would like to trace the water bridging the molecules from Hbond Cpptraj.
>
> I was able to find the bridge.dat , I would like to trace the specific
> structure how to do this could any one give me an insight !
>
> thank you
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Tue Oct 27 2015 - 07:30:07 PDT
