Re: [AMBER] difficulties in generate .prmtop and .inpcrd file for complex using Guassian calculated ligand charges

From: David A Case <dacase.scarletmail.rutgers.edu>
Date: Thu, 15 Oct 2015 08:35:46 -0400

On Thu, Oct 15, 2015, MarcZhang wrote:
>
> Created a new atom named: H05 within residue: .R<BP1 481>

This means that your PDB file has an atom named "H05" in residue "BP1", but
the Amber library file does not have such an atom. You need to modify either
the library file or the PDB file so that the atom names exactly match.

....dac


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Oct 15 2015 - 06:00:05 PDT
Custom Search