Thanks
I mean I have downloaded new versions of these files from this link
https://github.com/swails/JmsScripts
and used them instead
I will try to update Amber tools, but is it free of charge ?!
Regards
On Wed, Oct 14, 2015 at 2:47 PM, Jason Swails <jason.swails.gmail.com>
wrote:
> On Wed, Oct 14, 2015 at 6:34 AM, Hadeer ELHabashy <
> hadeer.elhabashi.gmail.com> wrote:
>
> > Dear sir
> >
> > wish you are fine !
> >
> > I am trying to replicate Amber tutorial18
> > http://ambermd.org/tutorials/advanced/tutorial18/section1.htm
> >
> > and I have problem with running cpinutil.py file.
> > I have updated it and other related files like cpin_data.py,
> > cpin_utilities.py, and readparm.py.
>
>
> What do you mean "updated"?
>
>
>
> > However, every time i ran this command
> > I got the following errors
> >
> > $AMBERHOME/bin/cpinutil.py -resname HIP GL4 AS4 -p 4lyt.prmtop -o
> > 4lyt.cpin
> >
> > Error " Traceback (most recent call last):
> > File "/home/hadeer/software/amber12/bin/cpinutil.py", line 165, in
> > <module>
> > if not prmtop_object.exists:
> > AttributeError: 'AmberParm' object has no attribute 'exists' "
> >
> > How can I fix this problem ?!
>
>
> Something is seriously broken here. Also, Amber 12 is very old at this
> point, and 3 versions of AmberTools have been released since then. Try
> upgrading to AmberTools 15 and use cpinutil.py from that package instead.
>
> HTH,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
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>
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Received on Wed Oct 14 2015 - 07:00:03 PDT
