Hi,
Yes it's free of charge, you can download it from here
http://ambermd.org/#AmberTools
Alternatively, I've you've already got AmberTools14 you can go to your
AMBERHOME and type
./update_amber --upgrade
and that should work
Cheers
Juan
On 14/10/15 14:41, Hadeer ELHabashy wrote:
> Thanks
>
> I mean I have downloaded new versions of these files from this link
> https://github.com/swails/JmsScripts
> and used them instead
>
> I will try to update Amber tools, but is it free of charge ?!
>
> Regards
>
> On Wed, Oct 14, 2015 at 2:47 PM, Jason Swails <jason.swails.gmail.com>
> wrote:
>
>> On Wed, Oct 14, 2015 at 6:34 AM, Hadeer ELHabashy <
>> hadeer.elhabashi.gmail.com> wrote:
>>
>>> Dear sir
>>>
>>> wish you are fine !
>>>
>>> I am trying to replicate Amber tutorial18
>>> http://ambermd.org/tutorials/advanced/tutorial18/section1.htm
>>>
>>> and I have problem with running cpinutil.py file.
>>> I have updated it and other related files like cpin_data.py,
>>> cpin_utilities.py, and readparm.py.
>>
>> What do you mean "updated"?
>>
>>
>>
>>> However, every time i ran this command
>>> I got the following errors
>>>
>>> $AMBERHOME/bin/cpinutil.py -resname HIP GL4 AS4 -p 4lyt.prmtop -o
>>> 4lyt.cpin
>>>
>>> Error " Traceback (most recent call last):
>>> File "/home/hadeer/software/amber12/bin/cpinutil.py", line 165, in
>>> <module>
>>> if not prmtop_object.exists:
>>> AttributeError: 'AmberParm' object has no attribute 'exists' "
>>>
>>> How can I fix this problem ?!
>>
>> Something is seriously broken here. Also, Amber 12 is very old at this
>> point, and 3 versions of AmberTools have been released since then. Try
>> upgrading to AmberTools 15 and use cpinutil.py from that package instead.
>>
>> HTH,
>> Jason
>>
>> --
>> Jason M. Swails
>> BioMaPS,
>> Rutgers University
>> Postdoctoral Researcher
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
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Received on Wed Oct 14 2015 - 07:30:03 PDT
