I compiled AmberTools successfully on El Capitan using the following command
./configure -noX11 -nomtkpp -macAccelerate gnu
Fabian
____________________
Dr. Fabian Glaser
Head of the Structural Bioinformatics section
Bioinformatics Knowledge Unit - BKU
The Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering
Technion - Israel Institute of Technology, Haifa 32000, ISRAEL
fglaser at technion dot ac dot il
Tel: +972 4 8293701
http://bku.technion.ac.il
> On 21 Oct 2015, at 10:38 PM, Jason Swails <jason.swails.gmail.com> wrote:
>
> On Wed, Oct 21, 2015 at 2:11 PM, Mochena, Mogus D. <mogus.mochena.famu.edu>
> wrote:
>
>> I have downloaded ambertools and trying to configure following
>> instructions from amber15.pdf. My operating system is Mac O S X 10.11 (El
>> Captan). I have used Xcode 7.0.1 to get gnu compilers gcc and g++; gfortran
>> was not included, so I installed it separately.
>>
>
> How did you install it? Because the error you are getting is likely
> caused by how you installed gfortran. Since Amber relies on cross-linking
> Fortran and C codes, libgfortran is needed at link time to compile many
> programs. If it's not available, Amber won't work.
>
> The typical way that we recommend users get gfortran is through MacPorts.
> You can see my Mac tutorial here: http://jswails.wikidot.com/mac-os-x
>
> It's a bit dated, but getting MacPorts installed and getting gcc installed
> should still be up-to-date.
>
> HTH,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
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Received on Thu Oct 22 2015 - 03:30:04 PDT
