On Fri, Oct 16, 2015 at 2:00 PM, David A Case <
dacase.scarletmail.rutgers.edu> wrote:
> On Tue, Oct 13, 2015, Ivanov, Maxim wrote:
> >
> > I am having troubles configuring AmberTools14 on my local machine (OS X
> > 10.10.1). In particular, there is something wrong with the NetCDF.
> > I have gcc, g++ and gfortran (all are version 5.2.0) installed with brew
> > in /usr/local/bin
>
> I'm not sure that any Amber developer has yet tested gcc 5.2 (I've only
> gone
> to 5.1). You could try to see if the latest netcdf (not the one bundled
> with
> the AmberTools tarball) can be built on your machine. If so, you could
> use the --with-netcdf flag to configure to point to that location.
>
> I didn't find any reports of problems with netcdf and gcc 5.2 in a cursory
> search, but maybe something is out there. Does brew supply a netcdf?
> You can get it from macports, but then (one assumes) you might need/want
> to use the macports version of gcc.
>
I just tried out gcc 5.2 on my MacBook Pro (OS X 10.10.5 -- not the latest
El Capitan), and it worked fine. Admittedly this was with a git checkout,
but I'll try with an AmberTools 15 release soon.
All the best,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Sat Oct 17 2015 - 09:30:03 PDT
