On Mon, Oct 26, 2015 at 7:41 AM, Hadeer ELHabashy <
hadeer.elhabashi.gmail.com> wrote:
> I tried
>
> python $AMBERHOME/bin/parmed.py -p mol.top -inpcrd mol.crd script.in
>
> with this script.in
>
> printdetails :MET.O
> printdetails :MET.OXT
> parmout details.out
>
>
> However, I got this error
>
> Loaded Amber topology file mol.top
> Traceback (most recent call last):
> File "amber12/bin/parmed.py", line 126, in <module>
> amber_prmtop.add_parm(parm)
> File "/amber12/lib/python2.7/site-packages/ParmedTools/parmlist.py", line
> 34, in add_parm
> parm = load_file(parm)
> File "amber12/lib/python2.7/site-packages/chemistry/formats/registry.py",
> line 119, in load_file
> name, arg)
> TypeError: not enough arguments for format string
>
> Any suggestion ?!
>
What version of Amber are you using? Your path says "amber12", but the
traceback you're showing contains code that is only part of AmberTools 15.
So I'm confused.
The "printDetails" commands work fine for me using an AmberTools 15
release. If you go to $AMBERHOME/AmberTools/test and run the command "make
test.parmed", does it finish successfully?
Did you install any other version of ParmEd into the Amber directory at
any point? (perhaps from Github?)
All the best,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Mon Oct 26 2015 - 06:00:07 PDT
