So I am trying to get AT15 compiled.
I use Fink with MacOS 10.11.1.
I’ve installed Fink gcc 5.2 (the only option I have, since 4.2 is Mac OS
system and it not cross built with gfortran).
I’ve changed AmberTools/src/configure2 so to use gfortran-fsf-5, g++-fsf-5
and gcc-fsf-5.
All starts fine but at
hecking NetCDF...
Using bundled NetCDF library.
NetCDF must be rebuilt.
Configuring NetCDF C interface (may be time-consuming)...
Compiling the NetCDF C interface (may be time-consuming)...
Configuring NetCDF Fortran interface (may be time-consuming)...
Compiling the NetCDF Fortran interface (may be time-consuming)...
Error: Could not compile with NetCDF Fortran interface.
Compile error follows:
Undefined symbols for architecture x86_64:
…
___netcdf_MOD_nf90_sync in libnetcdff.a(netcdf.o)
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
Error: NetCDF build failed.
Configure failed due to the errors above!
Who had successfully built AT15 on 10.11.1 with Fink gcc?
Any suggestion would be very welcome.
Thanks,
Alan
PS. I have Amber11 and I will try to get it working too, but let me get
AT15 first.
--
Alan Wilter SOUSA da SILVA, DSc
Senior Bioinformatician, UniProt
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
Tel: +44 (0)1223 494588
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Received on Mon Oct 26 2015 - 16:30:03 PDT
