Hi Abhipriya,
I am not exactly sure what you mean by "detailed output of the hbond
data", but I guess this should help you out:
In VMD do the following:
Graphical Representations window > Draw style tab > Drawing Method > HBonds
Graphical Representations window > Trajectory tab > Update Selection Every
Frame
Best,
------------------------------------------------------
Dr. Matej Repic
Ecole Polytechnique Fédérale de Lausanne
Laboratory of Computational Chemistry and Biochemistry
SB - ISIC LCBC
BCH 4108
CH - 1015 Lausanne
------------------------------------------------------
On 10/14/15, 08:21, "Abhipriya K" <abhipriya0406.gmail.com> wrote:
>Dear Amber users,
>
>I am analyzing my simulation results using Visual Molecular Dynamics
>program. I am able to generate the detailed output file of the hbond data.
>But, I want to visualize the real-time hydrogen bond formation between two
>residues/atoms. Is there any option for doing the same using VMD?
>
>Any suggestions/help is highly appreciated.
>
>Many thanks,
>--
>Abhipriya
>Junior Research Fellow
>National Institute for Research in Reproductive Health (ICMR)
>J.M. Street, Parel, Mumbai 400012
>INDIA
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Received on Wed Oct 14 2015 - 00:30:03 PDT
