Amber Archive Jul 2013 by date
- Sunday, 30 June 2013
- Monday, 1 July 2013
- [AMBER] ANN: mdtraj 0.3 released Robert McGibbon
- [AMBER] Anomalous peak of RDF of water when using ptraj of AmberTools12 kurisaki
- Re: [AMBER] error in running MMPBSA.MPI , mmpbsa_py_energy could not be found Jason Swails
- Re: [AMBER] experiences with EVGA GTX TITAN Superclocked - memtestG80 - UNDERclocking in Linux ? Marek Maly
- [AMBER] How to define reaction coordinate in Umbrella sampeling Sindrila Dutta banik
- Re: [AMBER] error in running MMPBSA.MPI , mmpbsa_py_energy could not be found onetwo
- [AMBER] MMPBSA.py.MPI run issues Asmita Gupta
- Re: [AMBER] error in running MMPBSA.MPI , mmpbsa_py_energy could not be found Bill Miller III
- Re: [AMBER] error in running MMPBSA.MPI , mmpbsa_py_energy could not be found onetwo
- [AMBER] The recommended way to create periodic box around lipid bilayer system ? Marek Maly
- [AMBER] AMBER atom types in parm10.dat don't match antechamber Brian Radak
- Re: [AMBER] experiences with EVGA GTX TITAN Superclocked - memtestG80 - UNDERclocking in Linux ? Ross Walker
- Re: [AMBER] experiences with EVGA GTX TITAN Superclocked - memtestG80 - UNDERclocking in Linux ? Marek Maly
- Re: [AMBER] error in running MMPBSA.MPI , mmpbsa_py_energy could not be found Jason Swails
- Re: [AMBER] The recommended way to create periodic box around lipid bilayer system ? David A Case
- Re: [AMBER] Anomalous peak of RDF of water when using ptraj of AmberTools12 Daniel Roe
- [AMBER] MD simulation parameters: urgent please Mary Varughese
- Re: [AMBER] GTX780 Michael Lerner
- [AMBER] Fixing pdb files prepared in VMD, minor errors Hunter Brown
- Re: [AMBER] GTX780 Ross Walker
- Re: [AMBER] The recommended way to create periodic box around lipid bilayer system ? Marek Maly
- Re: [AMBER] The recommended way to create periodic box around lipid bilayer system ? Daniel Roe
- [AMBER] viewing PREPIN/PREPC files Rejwan
- [AMBER] VMD prepared errors (precise error messages) Hunter Brown
- Re: [AMBER] VMD prepared errors (precise error messages) Daniel Roe
- Re: [AMBER] MMPBSA.py.MPI run issues Jason Swails
- Re: [AMBER] The recommended way to create periodic box around lipid bilayer system ? Marek Maly
- Re: [AMBER] viewing PREPIN/PREPC files David A Case
- Re: [AMBER] Anomalous peak of RDF of water when using ptraj of AmberTools12 kurisaki
- Re: [AMBER] MD simulation parameters: urgent please David A Case
- Re: [AMBER] Fixing pdb files prepared in VMD, minor errors David A Case
- Re: [AMBER] AMBER atom types in parm10.dat don't match antechamber David A Case
- Re: [AMBER] MD simulation parameters: urgent please Mary Varughese
- [AMBER] &ewald skinnb=2.0d0 / 涂志萍
- Re: [AMBER] &ewald skinnb=2.0d0 / Scott Le Grand
- Re: [AMBER] &ewald skinnb=2.0d0 / 涂志萍
- [AMBER] NVE Energy/Temperature Drift Issue James W. Snyder, Jr.
- Re: [AMBER] NVE Energy/Temperature Drift Issue Ross Walker
- Re: [AMBER] NVE Energy/Temperature Drift Issue Daniel Roe
- [AMBER] MD simulation parameters: urgent please Daniel Roe
- Re: [AMBER] &ewald skinnb=2.0d0 / Ross Walker
- Re: [AMBER] NVE Energy/Temperature Drift Issue James W. Snyder, Jr.
- Re: [AMBER] NVE Energy/Temperature Drift Issue Ross Walker
- Re: [AMBER] MD simulation parameters: urgent please Mary Varughese
- Re: [AMBER] NVE Energy/Temperature Drift Issue James W. Snyder, Jr.
- Re: [AMBER] MD simulation parameters: urgent please Mary Varughese
- Re: [AMBER] NVE Energy/Temperature Drift Issue Ross Walker
- [AMBER] About cntrl error...please help.. 전선희
- Re: [AMBER] About cntrl error...please help.. Ross Walker
- Re: [AMBER] MMPBSA.py.MPI run issues Asmita Gupta
- Tuesday, 2 July 2013
- Wednesday, 3 July 2013
- Thursday, 4 July 2013
- Friday, 5 July 2013
- Saturday, 6 July 2013
- Sunday, 7 July 2013
- Monday, 8 July 2013
- Tuesday, 9 July 2013
- Wednesday, 10 July 2013
- Thursday, 11 July 2013
- [AMBER] Wrong results in GTX TITAN, correct results on GTX580 iqtcub
- [AMBER] Is it possible to do constant pH simulations by titrating the basic residues as well? #YIP YEW MUN#
- Re: [AMBER] Methylated histidine lib and frcomd files FyD
- Re: [AMBER] Methylated histidine lib and frcomd files George Patargias
- Re: [AMBER] Wrong results in GTX TITAN, correct results on GTX580 ET
- Re: [AMBER] "Incomplete Improper Torsion line" error David A Case
- Re: [AMBER] First to Second Frame Position Jump Carlos Simmerling
- Re: [AMBER] Is it possible to do constant pH simulations by titrating the basic residues as well? Jason Swails
- Re: [AMBER] Amber 12 on OSX 10.8.4 Jason Swails
- Re: [AMBER] Methylated histidine lib and frcomd files FyD
- Re: [AMBER] First to Second Frame Position Jump Parker de Waal
- Re: [AMBER] Wrong results in GTX TITAN, correct results on GTX580 Scott Le Grand
- [AMBER] espgen and G09 Hannes Loeffler
- Re: [AMBER] First to Second Frame Position Jump Daniel Roe
- Re: [AMBER] Is it possible to do constant pH simulations by titrating the basic residues as well? Yip Yew Mun
- [AMBER] Amber12 installation on SGI cluster George Tzotzos
- Re: [AMBER] Wrong results in GTX TITAN, correct results on GTX580 ET
- Re: [AMBER] Is it possible to do constant pH simulations by titrating the basic residues as well? Christina Bergonzo
- Re: [AMBER] espgen and G09 Sergio R Aragon
- Re: [AMBER] Amber 12 on OSX 10.8.4 Wang Chern Hoe (Dr)
- Re: [AMBER] Amber12 installation on SGI cluster David A Case
- Re: [AMBER] First to Second Frame Position Jump Parker de Waal
- Re: [AMBER] First to Second Frame Position Jump Daniel Roe
- Re: [AMBER] Residue chirality Karl N. Kirschner
- [AMBER] MCPB Jinqiang
- Re: [AMBER] Residue chirality Carlos Simmerling
- Re: [AMBER] First to Second Frame Position Jump Parker de Waal
- Re: [AMBER] espgen and G09 Hannes Loeffler
- Re: [AMBER] espgen and G09 Sergio R Aragon
- Re: [AMBER] GTX780 News ET
- Re: [AMBER] Wrong results in GTX TITAN, correct results on GTX580 Marek Maly
- Re: [AMBER] fix_traj_parm.py problems Fabrício Bracht
- Re: [AMBER] GTX780 News Scott Le Grand
- Re: [AMBER] Wrong results in GTX TITAN, correct results on GTX580 Scott Le Grand
- Re: [AMBER] fix_traj_parm.py problems Jason Swails
- Re: [AMBER] Wrong results in GTX TITAN, correct results on GTX580 Marek Maly
- Re: [AMBER] Problem related to the umbrella sampling Jason Swails
- Re: [AMBER] fix_traj_parm.py problems Fabrício Bracht
- Re: [AMBER] Problem with visualization in VMD after using AUTOIMAGE Daniel Roe
- [AMBER] hbond analysis - bridgeout Fabrício Bracht
- Re: [AMBER] Problem related to the umbrella sampling Sindrila Dutta banik
- Re: [AMBER] GTX780 News ET
- Re: [AMBER] Wrong results in GTX TITAN, correct results on GTX580 Ross Walker
- Re: [AMBER] Problem related to the umbrella sampling Adrian Roitberg
- Re: [AMBER] fix_traj_parm.py problems Jason Swails
- Re: [AMBER] hbond analysis - bridgeout Daniel Roe
- [AMBER] compilation of amber12 on cray system Jorgen Simonsen
- Re: [AMBER] compilation of amber12 on cray system Jason Swails
- Re: [AMBER] compilation of amber12 on cray system Jorgen Simonsen
- Re: [AMBER] compilation of amber12 on cray system Jason Swails
- Re: [AMBER] compilation of amber12 on cray system Jorgen Simonsen
- Re: [AMBER] fix_traj_parm.py problems Fabrício Bracht
- Re: [AMBER] hbond analysis - bridgeout Fabrício Bracht
- Re: [AMBER] hbond analysis - bridgeout Daniel Roe
- Re: [AMBER] hbond analysis - bridgeout Fabrício Bracht
- Re: [AMBER] compilation of amber12 on cray system Jason Swails
- Re: [AMBER] compilation of amber12 on cray system Jorgen Simonsen
- Re: [AMBER] compilation of amber12 on cray system Jason Swails
- Re: [AMBER] fix_traj_parm.py problems Jason Swails
- Re: [AMBER] compilation of amber12 on cray system Jorgen Simonsen
- [AMBER] Problems with generating histograms in AMBER tutorial 18 Yip Yew Mun
- Re: [AMBER] GTX780 News ET
- [AMBER] Reference for TI derivation Manikanthan Bhavaraju
- Re: [AMBER] First to Second Frame Position Jump Parker de Waal
- Re: [AMBER] Wrong results in GTX TITAN, correct results on GTX580 Ross Walker
- Re: [AMBER] Problems with generating histograms in AMBER tutorial 18 Daniel Roe
- Re: [AMBER] Problems with generating histograms in AMBER tutorial 18 Yip Yew Mun
- Re: [AMBER] compilation of amber12 on cray system Jason Swails
- [AMBER] CUDA MPI compilation issue Wang Chern Hoe (Dr)
- Re: [AMBER] fix_traj_parm.py problems Fabrício Bracht
- Re: [AMBER] Reference for TI derivation Jason Swails
- Re: [AMBER] Problems with generating histograms in AMBER tutorial 18 Daniel Roe
- Re: [AMBER] GTX780 News Ross Walker
- Re: [AMBER] CUDA MPI compilation issue Jason Swails
- Re: [AMBER] fix_traj_parm.py problems Jason Swails
- Re: [AMBER] GTX780 News Jason Swails
- Re: [AMBER] fix_traj_parm.py problems Fabrício Bracht
- Re: [AMBER] GTX780 News Fenley, Andrew
- Re: [AMBER] GTX780 News Ross Walker
- Re: [AMBER] GTX780 News Ross Walker
- Re: [AMBER] fix_traj_parm.py problems Daniel Roe
- Re: [AMBER] GTX780 News Fenley, Andrew
- Re: [AMBER] fix_traj_parm.py problems Fabrício Bracht
- Re: [AMBER] Problem related to the umbrella sampling Sindrila Dutta banik
- Re: [AMBER] fix_traj_parm.py problems Jason Swails
- Re: [AMBER] Problem related to the umbrella sampling Jason Swails
- Friday, 12 July 2013
- Saturday, 13 July 2013
- Sunday, 14 July 2013
- Monday, 15 July 2013
- Tuesday, 16 July 2013
- Wednesday, 17 July 2013
- Thursday, 18 July 2013
- Friday, 19 July 2013
- Saturday, 20 July 2013
- Sunday, 21 July 2013
- Monday, 22 July 2013
- Tuesday, 23 July 2013
- Wednesday, 24 July 2013
- Thursday, 25 July 2013
- Friday, 26 July 2013
- Saturday, 27 July 2013
- Sunday, 28 July 2013
- Monday, 29 July 2013
- Tuesday, 30 July 2013
- Wednesday, 31 July 2013
- Last message date: Wed Jul 31 2013 - 20:30:04 PDT
- Archived on: Sun Dec 22 2024 - 05:54:49 PST
