Hi,
On Tue, Jul 9, 2013 at 1:23 PM, Hunter Brown <bassoongoon.earthlink.net> wrote:
> fibril2.mdcrd should have 1,000 frames, however, when I load it in VMD or Chimera, I am only given 189 frames.
Actually, assuming you indeed have 2500 frames in each trajectory you
should have 2000 frames total based on your offset (2500/5 = 500, x4).
What does the 'INPUT TRAJECTORIES:' part of your output read? It
should be something like:
INPUT TRAJECTORIES:
0: [<filename>] is a <format>, Parm <topology name> (<box>) (reading X of N)
...
Coordinate processing will occur on M frames.
In your output, what is each 'X of N', and what is 'M' equal to?
-Dan
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
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Received on Tue Jul 09 2013 - 13:00:02 PDT
