Re: [AMBER] cyclic-di-nucleotid

From: Baldoni Hector Armando <hbaldoni.unsl.edu.ar>
Date: Mon, 8 Jul 2013 11:13:15 -0300 (ARGSL-ST)

Dear Francois,

Thank you very much for your detailed reply.

Best wishes,
Hector.

On Sun, 7 Jul 2013, FyD wrote:

> Dear Hector,
>
>> How must i do to download cyclic-di-nucleotid force field parametres from
>> the http://q4md-forcefieldtools server.
>
> R.E.D. Server generates molecular electrostatic potential based charge
> values embedded in force field (FF) libraries; it does not generate FF
> parameters and it does not perform atom typing (definition of the atom
> types).
>
> on the contrary R.E.D. Python (not yet available); does all in one
> step; you could run R.E.D. Server; this means:
> - build a pdb fie for this cyclic-di-nucleotide
> - run R.E.D. Server/Ante_R.E.D. 2.0 to generate a P2N file
> - run R.E.D. Server/R.E.D. IV to generate the mol2 file (has a role of
> FF lib).
>
> We can post-process your data with R.E.D. Python if you provide us the
> PXXXX R.E.D. Server/R.E.D. IV job.
>
> regards, Francois
>
>
>
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> http://lists.ambermd.org/mailman/listinfo/amber
>

-- 
---------------------------------------
  Dr. Hector A. Baldoni
  Area de Quimica General e Inorganica
  Universidad Nacional de San Luis
  Chacabuco 917
  5700 San Luis - Argentina
  hbaldoni.unsl.edu.ar
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Received on Mon Jul 08 2013 - 07:30:03 PDT
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