[AMBER] installing Amber 11 and Amber tools 1.5

From: Muthukumaran R <kumaran.bicpu.edu.in>
Date: Fri, 5 Jul 2013 09:36:25 +0530

Amber users,

I am installing Amber 11 and Ambertools 1.5 first time on Intel Xeon
workstation working on CentOS6.3 (64 bit), While applying Amber11 patches
for the bug fixes 1-23, I meet with errors shown below.

Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file src/sander/short_ene.f.rej
patching file src/pmemd/src/cuda/gpu.cpp
Hunk #1 FAILED at 442.
Hunk #2 FAILED at 3033.
Hunk #3 FAILED at 3068.
Hunk #4 FAILED at 3859.

 the log file is attached with this mail for the convenience

but while patching AmberTools (bugfixes 1-28) didn't encounter any errors.

Ignoring these errors while patching, then I continued the amber
installation. While testing amber with "make tests", 15 of them failed of
which most of them were sander pbsa associated files.

suggestions will greatly help me,

Muthukumaran R

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Received on Thu Jul 04 2013 - 21:30:02 PDT
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