Dear Sir/madam,
I am using AMBER10 and AMBER12.
I prepared the prmtop and inpcrd files using leaprc.ff99bsc0 command. What is the name of force fields used for DNA and Protein respectively. I believe ff99SB was used for protein, f99bsc0 was used for nucleic acids. Am I correct?
Can I read the force field information from the inpcrd or prmtop files directly?
Is it the right force field to be used for DNA-Protein complex?
Thanks,
Catherine
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Received on Tue Jul 30 2013 - 05:30:03 PDT
