Hi Ayesha,
if you have two components (e.g. separate PDB, MOL2 files) and
want to create some initial complex system using those structures,
you might consider to use UCSF Chimera software (
http://www.cgl.ucsf.edu/chimera/ ).
Best,
Marek
Dne Thu, 04 Jul 2013 18:00:53 +0200 Ayesha Fatima
<ayeshafatima.69.gmail.com> napsal/-a:
> Dear All,
> I maybe askinga very silly question but I want to simulate a protein
> complex and a bound ligand. I am unsure of preparing the protein complex
> made of two proteins. I tried looking over the internet and the mailing
> list but i am unsure of my keywords to search properly. I am sure, most
> of
> you ahve some experience with this. My question is do i prepare the two
> separately or the whole complex as one? in case they are prepared
> separately how do we concatenate the the two files again as a complex?
> I would appreciate a reference to literature if someone has it.
> Thank you in advance
> regards
> ayesha fatima
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Received on Thu Jul 04 2013 - 09:30:03 PDT
