[AMBER] simulating complexes

From: Ayesha Fatima <ayeshafatima.69.gmail.com>
Date: Fri, 5 Jul 2013 00:00:53 +0800

Dear All,
I maybe askinga very silly question but I want to simulate a protein
complex and a bound ligand. I am unsure of preparing the protein complex
made of two proteins. I tried looking over the internet and the mailing
list but i am unsure of my keywords to search properly. I am sure, most of
you ahve some experience with this. My question is do i prepare the two
separately or the whole complex as one? in case they are prepared
separately how do we concatenate the the two files again as a complex?
I would appreciate a reference to literature if someone has it.
Thank you in advance
ayesha fatima
AMBER mailing list
Received on Thu Jul 04 2013 - 09:30:02 PDT
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