[AMBER] ptraj, outprefix not giving a stripped prmtop

From: Hunter Brown <bassoongoon.earthlink.net>
Date: Tue, 23 Jul 2013 14:40:28 -0600 (GMT-06:00)

I have included here my ptraj script:

trajin MD_prod1.mdcrd 1 2500 5
trajin MD_prod2.mdcrd 1 2500 5
trajin MD_prod3.mdcrd 1 2500 5
trajin MD_prod4.mdcrd 1 2500 5
strip :WAT outprefix strip
center origin :MET
image origin center familiar
trajout 2foldposionized.mdcrd

It produces the file 2foldposionized.mdcrd, but fails to produce the strip.prmtop file.

I do not think that my usage is incorrect, but it might be.

Is there something wrong with my script?

Thanks in advance,


Hunter Brown
Bassoonist, Contrabassoonist, Composer, Chemical Engineering Major
University of New Mexico

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Received on Tue Jul 23 2013 - 14:00:02 PDT
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