[AMBER] minimization codes

From: Wang Chern Hoe (Dr) <"Wang>
Date: Mon, 22 Jul 2013 15:00:51 +0800

Hi,

Does anyone know the meaning of these codes from the output file of energy minimization ? Are they referring to protein atoms or is it the name of an energy minimization algorithm ?

HA
ND2
CG
CD
OG
OG1
HE2
CE

What about GMAX ? What does it mean ? I could not find these in the Amber 12 manual.


Regards

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Received on Mon Jul 22 2013 - 00:30:02 PDT
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