Please use with -d option (debug):
acpype -di ben.mol2 -c user (worked for me).
It seems your amber tools installation is not correct. What :
which parmchk
shows?
Amber tools binaries ($AMBERHOME/bin) has to be in your $PATH.
Thanks for using ACPYPE!
Alan
On 21 July 2013 01:42, Jonathan Saboury <jsabou1.gmail.com> wrote:
> I know I should request for help on the acpype support and I have done
> so. I do not know how long they take on support however and thought
> I'd post here to see if anyone knows the problem.
>
>
> Steps I did:
> 1. Have file "ben.mol2": http://pastebin.com/raw.php?i=H54VVUNp
> 2. Put the command "acpype -i ben.mol2 -c user"
> Bash Output:http://pastebin.com/raw.php?i=4pWHzD4y
>
> Using Ambertools13, ACPYPE Rev: 7268 on Ubuntu 13.04
>
> Thanks :)
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Alan Wilter SOUSA da SILVA, DSc
Bioinformatician, UniProt - PANDA, EMBL-EBI
CB10 1SD, Hinxton, Cambridge, UK
+44 1223 49 4588
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Jul 21 2013 - 01:30:03 PDT
