Re: [AMBER] Amber 12 on OSX 10.8.4

From: Jason Swails <>
Date: Thu, 11 Jul 2013 08:53:16 -0400

On Jul 11, 2013, at 2:01 AM, "Wang Chern Hoe (Dr)" <> wrote:

> server:amber12 user$ port installed | grep netcdf
> netcdf . (active)

Try deactivating your NetCDF port when you install Amber. What's happening is that the installation process is trying to use the NetCDF library you built with macports (which does not have the Fortran symbols) instead of the one built by Amber.

Use the command

sudo port deactivate netcdf

Then run make again. Afterward, you can reactivate NetCDF if you need it.

sudo port activate netcdf


Jason M. Swails
Quantum Theory Project
University of Florida
Ph.D. Candidate
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Received on Thu Jul 11 2013 - 06:00:03 PDT
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