On Wed, Jul 31, 2013, Catein Catherine wrote:
> However, it is not clear to me the differences between igb=2 or igb=5.
Join the club! I don't think there are any systematic diffs between these two
models. And both are now obsolete. For proteins, my recommendation is to use
igb=8; for nucleic acids, I personally still like igb=1, but opinions differ.
See, e.g.
%A T. Gaillard
%A D.A. Case
%T Evaluation of DNA Force Fields in Implicit Solvation
%J J. Chem. Theory Comput.
%V 7
%P 3181-3198
%D 2011
...dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 31 2013 - 05:00:03 PDT
