[AMBER] Amber11 AmberTools1.5 installation problem

From: Sangeetha B <sangeetha.bicpu.edu.in>
Date: Tue, 2 Jul 2013 21:03:06 +0530

Dear Amber users,

I am installing Amber 11 and Ambertools 1.5 on Intel Xeon workstation
working on CentOS6.3 (64 bit).
While applying Amber11 patches for the bug fixes 1-23, I get errors as
shown below.

Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file src/sander/short_ene.f.rej
patching file src/pmemd/src/cuda/gpu.cpp
Hunk #1 FAILED at 442.
Hunk #2 FAILED at 3033.
Hunk #3 FAILED at 3068.
Hunk #4 FAILED at 3859.

I have attached the log file with this mail.

However, patching AmberTools (bugfixes 1-28) was successful without any

Ignoring these errors while patching, I continued the amber installation.
While testing amber with "make tests", 15 of them failed of which most of
them were sander pbsa associated files.

Any help regarding applying these patches will be very helpful.

Thank you,
With regards,
B. Sangeetha

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Received on Tue Jul 02 2013 - 09:00:02 PDT
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