[AMBER] Ptraj B Factor PDB

From: Parker de Waal <Parker.deWaal09.kzoo.edu>
Date: Mon, 15 Jul 2013 11:52:47 -0400

Hi Everyone!

I'd like to map the b factors obtained from ptraj to the pdb of my original
protein to visualize regions of higher flexibility. Can this be done in
ptraj?

My current input is as follows:
trajin density_extend.nc
average bfac.pdb pdb
atomicfluct out RMSF.dat :1-465 byres bfactor

Best,
Parker
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Received on Mon Jul 15 2013 - 09:00:03 PDT