Amber Archive May 2011 by thread
- [AMBER] MMPBSA for trimerization process Lekpa Duukori (Sun May 01 2011 - 03:19:32 PDT)
- Re: [AMBER] compile errors with AmberTools1.5 + Amber11 Jason Swails (Sun May 01 2011 - 03:45:05 PDT)
- Re: [AMBER] mmpbsa nmode problem Jason Swails (Sun May 01 2011 - 03:53:40 PDT)
- [AMBER] question regarding H-bond calculation juzer stationwala (Sun May 01 2011 - 08:15:48 PDT)
- Re: [AMBER] ptraj trajectory file size limits? Nicole A. Horenstein (Sun May 01 2011 - 08:42:01 PDT)
- [AMBER] Antechamber Problem souvik sur (Sun May 01 2011 - 10:46:40 PDT)
- [AMBER] help with ewald parameter tsurma.umich.edu (Sun May 01 2011 - 18:37:18 PDT)
- Re: [AMBER] help with antechamber tsurma.umich.edu (Sun May 01 2011 - 18:37:55 PDT)
- [AMBER] Hardwares requirement souvik sur (Mon May 02 2011 - 00:38:51 PDT)
- [AMBER] mmpbsa problems with amber 11 Guenegou, Guillaume [ORDFR] (Mon May 02 2011 - 00:48:32 PDT)
- [AMBER] Fwd: parameters sodium phosfate Domenica Dibenedetto (Mon May 02 2011 - 03:40:33 PDT)
- [AMBER] Forcefield for Modified RNA hari krishna (Mon May 02 2011 - 21:49:44 PDT)
- Re: [AMBER] RED conformation weights FyD (Tue May 03 2011 - 02:13:13 PDT)
- [AMBER] Usage non-zero IVCAP in MM-PBSA ? Marek Maly (Tue May 03 2011 - 05:48:57 PDT)
- Re: [AMBER] MCPB help Hashem Taha (Tue May 03 2011 - 08:51:19 PDT)
- [AMBER] MCPB problem Manish (Tue May 03 2011 - 09:31:36 PDT)
- Re: [AMBER] defining the mixed 1-4 scaling in amber 11 and sleap Jason Swails (Tue May 03 2011 - 11:05:14 PDT)
- [AMBER] H-Bond %occupancy Sangita Kachhap (Tue May 03 2011 - 11:11:03 PDT)
- Re: [AMBER] AmberTools 1.4 PGI failed antechamber/sustiva test Shan-ho Tsai (Tue May 03 2011 - 13:10:38 PDT)
- [AMBER] forrtl: severe (64): input conversion error Jagur Lambix (Tue May 03 2011 - 14:17:03 PDT)
- Re: [AMBER] MCPB install problem setyanto md (Wed May 04 2011 - 00:48:35 PDT)
- Re: [AMBER] Loading .mol2 file in sleap r smith (Wed May 04 2011 - 06:04:52 PDT)
- Re: [AMBER] umbrella sampling on a difference of distances RC. David A. Case (Wed May 04 2011 - 06:33:48 PDT)
- Re: [AMBER] NPT simulation crash using a GPU CARD for a simulation carried out in a organic explicit solvent Ross Walker (Wed May 04 2011 - 09:16:28 PDT)
- [AMBER] MTK++ MCPB Example: Creating Force Field Modification Files Naveen Samala (Wed May 04 2011 - 10:48:39 PDT)
- [AMBER] Possibility to define residues pairs for inter-residual hbond analysis ? Marek Maly (Wed May 04 2011 - 11:57:04 PDT)
- [AMBER] MTK++/MCPB Error Loading AMBER prep file 1AMP_OH_chg2.prep in xleap Naveen Samala (Wed May 04 2011 - 13:47:17 PDT)
- [AMBER] System configuration requirement for installing Amber9 in cluster souvik sur (Wed May 04 2011 - 20:57:38 PDT)
- [AMBER] Error in creating a cpin file pankhuri arora (Wed May 04 2011 - 22:34:38 PDT)
- [AMBER] Xleap trouble souvik sur (Wed May 04 2011 - 23:53:11 PDT)
- Re: [AMBER] question about scmask Lishan Yao (Thu May 05 2011 - 02:29:43 PDT)
- [AMBER] forrtl: error (78): process killed (SIGTERM), MD simulation ligand molecule docked into protein siddesh southekal (Thu May 05 2011 - 03:07:19 PDT)
- [AMBER] problem with nmode poll.chemie.uni-hamburg.de (Thu May 05 2011 - 06:59:13 PDT)
- [AMBER] Solvent box John S (Thu May 05 2011 - 11:22:15 PDT)
- [AMBER] internal energy INT is not zero in mm_pbsa mirage . (Thu May 05 2011 - 12:15:56 PDT)
- [AMBER] Question about ptraj hbond schematic Kamali Sripathi (Thu May 05 2011 - 13:58:52 PDT)
- [AMBER] Entropy calculation using MM_PBSA.py mish (Thu May 05 2011 - 14:25:23 PDT)
- [AMBER] TS calculation Mahmoud Soliman (Thu May 05 2011 - 13:40:07 PDT)
- [AMBER] TS calculation Mahmoud Soliman (Fri May 06 2011 - 00:39:52 PDT)
- [AMBER] MMPBSA: Trajectory pre-processing George Tzotzos (Fri May 06 2011 - 03:30:05 PDT)
- [AMBER] Antechamber loading Problem souvik sur (Fri May 06 2011 - 05:25:22 PDT)
- [AMBER] parameter-for-peptide-blocking-group vhakkim boy (Fri May 06 2011 - 05:51:42 PDT)
- Re: [AMBER] forrtl: severe (64): input conversion error, unit -5, file Internal Formatted Read Katharina Lang (Fri May 06 2011 - 07:54:07 PDT)
- Re: [AMBER] Question about ptraj artifacts Kamali Sripathi (Fri May 06 2011 - 09:04:46 PDT)
- [AMBER] hbond solvent output problem ... Marek Maly (Fri May 06 2011 - 13:04:26 PDT)
- [AMBER] MTK++/MCPB Side Chain Model Naveen Samala (Fri May 06 2011 - 15:39:46 PDT)
- [AMBER] Problem in preparation of log file Sindrila Dutta banik (Sat May 07 2011 - 00:50:08 PDT)
- [AMBER] Positive Energy Kshatresh Dutta Dubey (Sat May 07 2011 - 03:22:04 PDT)
- [AMBER] Residue Template Sindrila Dutta banik (Sat May 07 2011 - 05:51:57 PDT)
- [AMBER] Clustering baljinder (Sat May 07 2011 - 08:57:42 PDT)
- [AMBER] PRCSM baljinder (Sat May 07 2011 - 09:00:11 PDT)
- Re: [AMBER] mmpbsa, mdfil: Error unknown flag: not Andrew Voronkov (Sat May 07 2011 - 11:08:41 PDT)
- [AMBER] installing ambertools Michael Forrester (Sat May 07 2011 - 11:24:00 PDT)
- [AMBER] selecting hydrogens in -NH groups for the hydrogen bonding facility in PTRAJ Jose Borreguero (Sat May 07 2011 - 12:05:48 PDT)
- Re: [AMBER] ptraj (AT 1.4) hiccups with gzipped trajectory files Kamali Sripathi (Sun May 08 2011 - 05:44:08 PDT)
- [AMBER] How to restart the MM-PBSA? geyan (Sun May 08 2011 - 06:16:50 PDT)
- [AMBER] Questions about compiling AmberToolsv1.4 Kamali Sripathi (Sun May 08 2011 - 06:53:01 PDT)
- [AMBER] help with antechamber tsurma.umich.edu (Sun May 08 2011 - 13:22:29 PDT)
- Re: [AMBER] Problem related to the Amber Ross Walker (Sun May 08 2011 - 21:34:58 PDT)
- [AMBER] NMODE calculations results doubtful vaibhav dixit (Sun May 08 2011 - 21:46:43 PDT)
- [AMBER] new lib loaded, but atom types are not recognized Chinh Su Tran To (Mon May 09 2011 - 01:05:37 PDT)
- [AMBER] How to add a new force field hanlu0366 (Mon May 09 2011 - 06:13:10 PDT)
- [AMBER] Simulated annealing Guenegou, Guillaume [ORDFR] (Mon May 09 2011 - 07:41:12 PDT)
- [AMBER] Amber 11 compilation Guenegou, Guillaume [ORDFR] (Mon May 09 2011 - 07:52:31 PDT)
- [AMBER] Problem with AMBER 11 and distance restraints Pablo Dans Puiggròs (Mon May 09 2011 - 08:23:31 PDT)
- Re: [AMBER] lennard Jones water parameters Wong, Sergio E. (Mon May 09 2011 - 10:04:16 PDT)
- [AMBER] nmode calculation Sangita Kachhap (Mon May 09 2011 - 10:42:16 PDT)
- [AMBER] Amoeba Potential File Modifications r smith (Mon May 09 2011 - 10:44:35 PDT)
- [AMBER] set UNIT box George Tzotzos (Mon May 09 2011 - 11:00:13 PDT)
- [AMBER] visualization of large .mdcrd files Bozell, Joseph John (Mon May 09 2011 - 12:46:26 PDT)
- [AMBER] Please help with - closestwater - problem Marek Maly (Mon May 09 2011 - 13:02:34 PDT)
- [AMBER] SASA parameters Amber99 Osvaldo Martin (Tue May 10 2011 - 07:10:28 PDT)
- [AMBER] system imaging Alex Rodriguez (Tue May 10 2011 - 09:09:36 PDT)
- [AMBER] Ptraj Hbond query. Maura Catherine Mooney (Tue May 10 2011 - 19:23:59 PDT)
- [AMBER] question about REMD Massimiliano Porrini (Wed May 11 2011 - 04:19:50 PDT)
- [AMBER] implicit solvent positional restraint Sangita Kachhap (Wed May 11 2011 - 04:24:45 PDT)
- [AMBER] contacts command in ptraj - amber 10 g t (Wed May 11 2011 - 09:18:45 PDT)
- [AMBER] ptraj clustering output Lekpa Duukori (Wed May 11 2011 - 10:12:14 PDT)
- [AMBER] closest command Sangita Kachhap (Wed May 11 2011 - 10:29:30 PDT)
- [AMBER] Compiling AMBER on Windows 7 with CUDA Starr Hazard (Wed May 11 2011 - 11:14:16 PDT)
- [AMBER] how to use Bennett acceptance ratio in Amber11? xiaodong huang (Wed May 11 2011 - 21:45:51 PDT)
- [AMBER] MMPBSA.py - entropy only? Jesper Sørensen (Thu May 12 2011 - 02:27:21 PDT)
- [AMBER] Problem with Equilibration Devlina Chakravarty (Thu May 12 2011 - 05:13:58 PDT)
- [AMBER] configuring AmberTools 1.5 for Intel MKL Brendan Duggan (Thu May 12 2011 - 09:13:02 PDT)
- [AMBER] Regarding MTK++/MCPB program to derive parameters using side chain model Naveen Samala (Thu May 12 2011 - 11:26:53 PDT)
- [AMBER] Energy is increasing during minimization Wook Lee (Fri May 13 2011 - 01:20:38 PDT)
- [AMBER] error in protein miniminisation dhilip kumar ramalingam (Fri May 13 2011 - 02:17:58 PDT)
- [AMBER] PhD position in Computational Structural Biology at MPI Muenster Vlad Cojocaru (Fri May 13 2011 - 02:45:23 PDT)
- [AMBER] MMPBSA entropy calculation yields different Delta S values sunita gupta (Fri May 13 2011 - 04:42:35 PDT)
- [AMBER] strange volume contraction Massimiliano Porrini (Fri May 13 2011 - 05:51:34 PDT)
- [AMBER] GLYCAM Users Please Read Lachele Foley (Lists) (Fri May 13 2011 - 11:53:20 PDT)
- [AMBER] AmberTools 1.4 from Amber11 on MACOSX Bruno Rodrigues (Sat May 14 2011 - 11:48:32 PDT)
- [AMBER] ptraj command Sangita Kachhap (Sun May 15 2011 - 05:28:23 PDT)
- [AMBER] need suggestion about NVIDIA GTX 590 setyanto md (Sun May 15 2011 - 19:34:36 PDT)
- [AMBER] segmentation fault when running sander Chinh Su Tran To (Sun May 15 2011 - 21:42:40 PDT)
- [AMBER] Using Gaussian 09 (g09), how can I obtain RESP charges of a new residue? Chiba Suntaro (Sun May 15 2011 - 22:00:19 PDT)
- [AMBER] MMPBSA.py, systematic error in ptraj entropy results? Jesper Sørensen (Mon May 16 2011 - 06:06:31 PDT)
- [AMBER] MMPBSA.py - problem processing trajs with ptraj Oliver Kuhn (Mon May 16 2011 - 07:12:20 PDT)
- [AMBER] CUDA Francesco Pietra (Mon May 16 2011 - 09:28:57 PDT)
- [AMBER] Hvdw: Non polar contribution to solvation in MMPBSA with solvent layer Lekpa Duukori (Mon May 16 2011 - 10:43:02 PDT)
- [AMBER] kclust_SegFault Maura Catherine Mooney (Mon May 16 2011 - 12:25:39 PDT)
- [AMBER] Regarding MTK++/MCPB program to derive parameters using side chain model Naveen Samala (Mon May 16 2011 - 13:00:22 PDT)
- [AMBER] MMPBSA.py - problem processing trajs with ptraj (in more detail) Oliver Kuhn (Mon May 16 2011 - 13:06:41 PDT)
- [AMBER] MMPBSA.py - problem processing trajs with ptraj (in more detail) - add Oliver Kuhn (Mon May 16 2011 - 13:22:23 PDT)
- [AMBER] error preparing a ligand using antechamber Paul Rigor (Mon May 16 2011 - 14:18:17 PDT)
- [AMBER] rst problem Sel Ercan (Tue May 17 2011 - 00:31:23 PDT)
- [AMBER] rst problem selami ercan (Tue May 17 2011 - 01:23:47 PDT)
- [AMBER] rst problem Sel Ercan (Tue May 17 2011 - 01:44:52 PDT)
- [AMBER] xleap as a molecular viewer Guenegou, Guillaume [ORDFR] (Tue May 17 2011 - 06:12:05 PDT)
- [AMBER] Amber 10 Eric Kaufmann (Tue May 17 2011 - 11:52:44 PDT)
- [AMBER] Large protein hydrogen bonding analysis Dmitry Osolodkin (Tue May 17 2011 - 13:14:13 PDT)
- [AMBER] A maximum of two parameters are acceptable kurisaki (Wed May 18 2011 - 02:41:40 PDT)
- [AMBER] Amber 11 Benchmark for GPUs - Binaries and an Evaluation Licenses Qamar Nazir (Wed May 18 2011 - 03:38:21 PDT)
- [AMBER] Hydrogens Langevin dynamics Massimiliano Porrini (Wed May 18 2011 - 05:01:00 PDT)
- [AMBER] regarding LINMIN failure dhilip kumar ramalingam (Wed May 18 2011 - 06:25:46 PDT)
- [AMBER] How to minimize buried bad contacts Scott Pendley (Wed May 18 2011 - 09:57:08 PDT)
- [AMBER] secundary structure analysis Jorgen Simonsen (Wed May 18 2011 - 10:22:07 PDT)
- [AMBER] antechamber ERROR George Tzotzos (Wed May 18 2011 - 11:24:35 PDT)
- [AMBER] Estiblish hanlu0366 (Thu May 19 2011 - 02:43:25 PDT)
- [AMBER] Solvation Sindrila Dutta banik (Thu May 19 2011 - 05:01:56 PDT)
- [AMBER] Amber order Rupa Madyal (Thu May 19 2011 - 06:36:31 PDT)
- [AMBER] Solvation Sindrila Dutta banik (Thu May 19 2011 - 04:11:05 PDT)
- [AMBER] Ptraj NAMD dcd imaging Manish (Thu May 19 2011 - 10:01:34 PDT)
- [AMBER] Use of uninitialized value $ENV{"AMBERHOME"} Jagur Lambix (Thu May 19 2011 - 11:46:02 PDT)
- [AMBER] Parametrizing a peptide ligand Gustavo Seabra (Thu May 19 2011 - 13:14:33 PDT)
- [AMBER] strange dihedral assignment by leap Thomas Gaillard (Thu May 19 2011 - 17:16:53 PDT)
- [AMBER] ptraj closest command supriyah.imtech.res.in (Fri May 20 2011 - 04:30:08 PDT)
- [AMBER] compilation of amber tools 1.5 with intel 11.1.059 Vlad Cojocaru (Fri May 20 2011 - 06:35:49 PDT)
- [AMBER] How to use mmpbsa.py for three-trajectory protocol? bin wang (Fri May 20 2011 - 07:00:55 PDT)
- [AMBER] Problem of PB calculation when running mmpbsa.py bin wang (Fri May 20 2011 - 12:36:29 PDT)
- [AMBER] Post-processing trajectories: ntpr - ntwx George Tzotzos (Sat May 21 2011 - 08:28:01 PDT)
- [AMBER] Ambertools 1.5 make install error Andre Serobian (Sat May 21 2011 - 16:22:37 PDT)
- [AMBER] Problems with calcein and antechamber Maria Federica Sanasi (Sun May 22 2011 - 03:35:00 PDT)
- [AMBER] regarding calculation of interaction energies dhilip kumar ramalingam (Mon May 23 2011 - 00:19:38 PDT)
- [AMBER] MMPBSA.py - entropy results Jesper Sørensen (Mon May 23 2011 - 02:37:27 PDT)
- [AMBER] calculation of interaction energy using mmpbsa dhilip kumar ramalingam (Mon May 23 2011 - 04:21:51 PDT)
- [AMBER] Solvation Sindrila Dutta banik (Mon May 23 2011 - 05:56:42 PDT)
- [AMBER] NEB calculation using amber 11 Buddhadev Maiti (Mon May 23 2011 - 10:14:13 PDT)
- [AMBER] Hvdw: Non polar contribution to solvation in MMPBSA with solvent layer Lekpa Duukori (Mon May 23 2011 - 10:24:47 PDT)
- [AMBER] NEB calculation using amber 11 Buddhadev Maiti (Mon May 23 2011 - 10:46:53 PDT)
- [AMBER] vacuum in Ewald Ignacio J. General (Mon May 23 2011 - 13:19:18 PDT)
- [AMBER] system extended beyond the virtual box Qian Wang (Mon May 23 2011 - 20:28:59 PDT)
- [AMBER] Fw: Estiblish hanlu0366 (Mon May 23 2011 - 20:40:38 PDT)
- [AMBER] MM-PB/SA calculation problem 姜笑楠 (Mon May 23 2011 - 23:03:32 PDT)
- [AMBER] Problem installing AMBER 11 (after installing AmberTools1.5) Marc van der Kamp (Tue May 24 2011 - 03:11:27 PDT)
- [AMBER] Topology File Sindrila Dutta banik (Tue May 24 2011 - 07:21:58 PDT)
- [AMBER] sander.MPI Bruno Rodrigues (Tue May 24 2011 - 12:21:52 PDT)
- [AMBER] how are you? scott.pendley.gmail.com (Tue May 24 2011 - 13:06:24 PDT)
- [AMBER] Size limit of traj file Jagur Lambix (Tue May 24 2011 - 14:34:42 PDT)
- [AMBER] AMBER scaling and Hardware Specs Azat Mukhametov (Tue May 24 2011 - 18:15:09 PDT)
- [AMBER] x86_64-alt-linux-gcc: cgen.o: No such file or directory make[1]: Leaving directory `/home/voronkov/amber11/AmberTools/src/nab' make: *** [serial] Error 2 Andrew Voronkov (Tue May 24 2011 - 23:05:08 PDT)
- [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Paul Rigor (Wed May 25 2011 - 00:49:18 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Ross Walker (Wed May 25 2011 - 09:38:44 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Jason Swails (Wed May 25 2011 - 10:27:27 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Scott Le Grand (Wed May 25 2011 - 10:54:24 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Paul Rigor (Wed May 25 2011 - 13:35:10 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Scott Le Grand (Wed May 25 2011 - 13:47:44 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Scott Le Grand (Wed May 25 2011 - 13:52:39 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Jason Swails (Wed May 25 2011 - 14:30:19 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Ross Walker (Wed May 25 2011 - 14:43:26 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Jason Swails (Wed May 25 2011 - 15:35:34 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Ross Walker (Wed May 25 2011 - 16:18:44 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Paul Rigor (Wed May 25 2011 - 17:53:37 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Paul Rigor (Wed May 25 2011 - 18:51:43 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Jason Swails (Wed May 25 2011 - 19:17:08 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Paul Rigor (Wed May 25 2011 - 19:25:56 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Paul Rigor (Wed May 25 2011 - 19:19:21 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Jason Swails (Wed May 25 2011 - 19:25:40 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Paul Rigor (Wed May 25 2011 - 19:41:32 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Jason Swails (Wed May 25 2011 - 19:54:07 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Paul Rigor (Wed May 25 2011 - 20:33:39 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Ross Walker (Wed May 25 2011 - 22:28:59 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Paul Rigor (Thu May 26 2011 - 23:34:27 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Ross Walker (Fri May 27 2011 - 09:02:22 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Jason Swails (Wed May 25 2011 - 19:12:22 PDT)
- Re: [AMBER] Test results for amber-cuda, single node, single GPU, Tesla C2070 Scott Le Grand (Wed May 25 2011 - 10:06:29 PDT)
- [AMBER] disappearing atoms using softcore TI - amber 11 Zora Strelcova (Wed May 25 2011 - 06:32:55 PDT)
- [AMBER] compilation with gcc 4.5.1 under openSuSE 11.4 64-bits JORGE IULEK (Wed May 25 2011 - 06:46:36 PDT)
- [AMBER] Questions re: NEB on a large system patrick wintrode (Wed May 25 2011 - 07:49:02 PDT)
- [AMBER] PROBLEM IN TERMINAL RESIDUES: WRONG BONDS Sindrila Dutta banik (Wed May 25 2011 - 09:27:27 PDT)
- [AMBER] CHAMBER Seibold, Stephen (Wed May 25 2011 - 10:18:25 PDT)
- [AMBER] AmberTools 1.5 and Amber11 Massimiliano Porrini (Wed May 25 2011 - 11:35:30 PDT)
- [AMBER] constrained atom minimization arikcohen (Wed May 25 2011 - 11:39:29 PDT)
- [AMBER] ibelly error qiaoyan (Wed May 25 2011 - 18:40:30 PDT)
- [AMBER] In ff99SB, what does this SB stands for ? mish (Thu May 26 2011 - 04:46:57 PDT)
- [AMBER] solvatebox George Tzotzos (Thu May 26 2011 - 06:20:25 PDT)
- [AMBER] Equilibration step of tutorial 3 taking much longer than estimated run time Daniel Aiello (Thu May 26 2011 - 07:07:30 PDT)
- [AMBER] watershell subrata paul (Thu May 26 2011 - 07:46:02 PDT)
- [AMBER] CHAMBER Seibold, Stephen (Thu May 26 2011 - 11:20:03 PDT)
- [AMBER] RAM requirements Dmitry Osolodkin (Thu May 26 2011 - 14:08:18 PDT)
- [AMBER] stripping of water Sangita Kachhap (Fri May 27 2011 - 00:13:15 PDT)
- [AMBER] rdf subrata paul (Fri May 27 2011 - 04:50:53 PDT)
- [AMBER] Defining molecules composed of new residues Brian Radak (Fri May 27 2011 - 07:02:25 PDT)
- [AMBER] typo in parm99.dat? Thomas Gaillard (Fri May 27 2011 - 08:41:29 PDT)
- [AMBER] AMBER11 Installation on FEDORA 15 Vivek Shankar Bharadwaj (Fri May 27 2011 - 10:00:21 PDT)
- [AMBER] problem with vector principal moitrayee.mbu.iisc.ernet.in (Fri May 27 2011 - 12:28:02 PDT)
- [AMBER] MMPBSA: protein-protein dimerisation George Tzotzos (Sat May 28 2011 - 02:03:26 PDT)
- [AMBER] MMPBSA nmode warning Sangita Kachhap (Sat May 28 2011 - 02:41:11 PDT)
- [AMBER] PROBLEM IN TERMINAL RESIDUES: WRONG BONDS Sindrila Dutta banik (Sat May 28 2011 - 22:03:04 PDT)
- [AMBER] problems with AmberTools 1.5 compilation Anna Reymer (Sun May 29 2011 - 03:35:00 PDT)
- Re: [AMBER] ambpdb water removal for rst files Andrew Voronkov (Sun May 29 2011 - 10:35:32 PDT)
- [AMBER] AMBER Shesh Nath (Mon May 30 2011 - 00:01:05 PDT)
- [AMBER] Where to send patches? Ake Sandgren (Mon May 30 2011 - 00:03:50 PDT)
- [AMBER] compiling errors when using Intel compiler and AmberTools 1.5 Bongkeun Kim (Mon May 30 2011 - 03:20:34 PDT)
- [AMBER] H-bond analysis Wu Xu (Mon May 30 2011 - 05:01:51 PDT)
- [AMBER] problem with running pmemd.mpi on cluster Zheng, Zhong (Mon May 30 2011 - 06:14:24 PDT)
- [AMBER] ptraj: rms George Tzotzos (Mon May 30 2011 - 08:45:56 PDT)
- [AMBER] Analysis of secondary structure Alessio Atzori (Mon May 30 2011 - 12:21:56 PDT)
- [AMBER] Normal Mode Analysis Deák Robi (Mon May 30 2011 - 15:59:51 PDT)
- [AMBER] hold H-bonds of ssRNA fixed Wu Xu (Mon May 30 2011 - 18:23:30 PDT)
- [AMBER] Restraints during relaxation Oliver Kuhn (Tue May 31 2011 - 04:40:13 PDT)
- [AMBER] Restraints during relaxation - add Oliver Kuhn (Tue May 31 2011 - 06:03:22 PDT)
- [AMBER] AMBER Shesh Nath (Tue May 31 2011 - 06:15:45 PDT)
- [AMBER] Configuration Checking souvik sur (Tue May 31 2011 - 06:41:47 PDT)
- [AMBER] continue simulation with extended conformation Daniel Schaal (Tue May 31 2011 - 07:06:48 PDT)
- [AMBER] protein scoop Aiko Matsumoto (Tue May 31 2011 - 08:50:36 PDT)
- [AMBER] Fwd: RE: Ambertools1.5 installing problems. ning-shiuan.lee.yale.edu (Tue May 31 2011 - 12:03:57 PDT)
- [AMBER] MTK++/MCPB: Problem in converting prep to xml Naveen Samala (Tue May 31 2011 - 15:19:03 PDT)
- [AMBER] XLEaP: Could not find type: Cl- Zheng (Tue May 31 2011 - 16:17:42 PDT)
- Last message date: Tue May 31 2011 - 21:00:02 PDT
- Archived on: Fri Apr 19 2024 - 05:54:04 PDT
