Hi,
First check and see if you have m4 but the config script is somehow
missing it. Type 'which m4'; if it's present you should see something
like:
[]$ which m4
/usr/bin/m4
If m4 is not present, try installing the 'm4' package. I think on
Ubuntu it should be something like "sudo apt-get install m4".
-Dan
On Tue, May 31, 2011 at 3:03 PM, <ning-shiuan.lee.yale.edu> wrote:
>> Hello,
>>
>> I am a grad student from Yale university and am trying to install
>> Ambertools in
>> my work station. I am using Kubontu (Ubontu 10.04) with gcc version
>> 4.4.3
>> (Ubuntu 4.4.3-4ubuntu5).
>> I followed the Ambertools 1.5 manual installation procedures and still
>> fail to
>> get it to work. The error messages I got was:
>>
>> test -z "/home/nicole/MD_AMBER/amber11/AmberTools/include" || mkdir -p
>> --
>> "/home/nicole/MD_AMBER/amber11/AmberTools/include"
>> /usr/bin/install -c -m 644 'netcdf.h'
>> '/home/nicole/MD_AMBER/amber11/AmberTools/include/netcdf.h'
>> m4 -DAPI=C ../man/netcdf.m4 >netcdf.3 || rm netcdf.3
>> /bin/bash: m4: command not found
>> test -z "/home/nicole/MD_AMBER/amber11/AmberTools/share/man/man3" ||
>> mkdir -p --
>> "/home/nicole/MD_AMBER/amber11/AmberTools/share/man/man3"
>> /usr/bin/install -c -m 644 'netcdf.3'
>> '/home/nicole/MD_AMBER/amber11/AmberTools/share/man/man3/netcdf.3'
>> /usr/bin/install: cannot stat `netcdf.3': No such file or directory
>> make[4]: *** [install-man3] Error 1
>> make[4]: Leaving directory
>> `/home/nicole/MD_AMBER/amber11/AmberTools/src/netcdf/src/libsrc'
>> make[3]: *** [install-am] Error 2
>> make[3]: Leaving directory
>> `/home/nicole/MD_AMBER/amber11/AmberTools/src/netcdf/src/libsrc'
>> make[2]: *** [install-recursive] Error 1
>> make[2]: Leaving directory
>> `/home/nicole/MD_AMBER/amber11/AmberTools/src/netcdf/src'
>> make[1]: *** [/home/nicole/MD_AMBER/amber11/lib/libnetcdf.a] Error 2
>> make[1]: Leaving directory
>> `/home/nicole/MD_AMBER/amber11/AmberTools/src/ptraj'
>> make: *** [serial] Error 2
>>
>> While it configured successfully, I could not fix this problem after
>> entering
>> sudo make install.
>> Does that mean there's some problem finding "netcdf.3" and a command
>> called "m4"
>> sis not work? I did find netcdf.3 in amber11/AmberTools/include
>> directory, and
>> am very confused. Perhaps I just didn't understand the error messages.
>> Could
>> you please help me out here?
>>
>> Thank you so much. I really really appreciate for any suggestions.
>>
>> Sincerely,
>> Nicole Lee
>
>
>
>
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Received on Tue May 31 2011 - 14:00:02 PDT
