> Hello,
>
> I am a grad student from Yale university and am trying to install
> Ambertools in
> my work station. I am using Kubontu (Ubontu 10.04) with gcc version
> 4.4.3
> (Ubuntu 4.4.3-4ubuntu5).
> I followed the Ambertools 1.5 manual installation procedures and still
> fail to
> get it to work. The error messages I got was:
>
> test -z "/home/nicole/MD_AMBER/amber11/AmberTools/include" || mkdir -p
> --
> "/home/nicole/MD_AMBER/amber11/AmberTools/include"
> /usr/bin/install -c -m 644 'netcdf.h'
> '/home/nicole/MD_AMBER/amber11/AmberTools/include/netcdf.h'
> m4 -DAPI=C ../man/netcdf.m4 >netcdf.3 || rm netcdf.3
> /bin/bash: m4: command not found
> test -z "/home/nicole/MD_AMBER/amber11/AmberTools/share/man/man3" ||
> mkdir -p --
> "/home/nicole/MD_AMBER/amber11/AmberTools/share/man/man3"
> /usr/bin/install -c -m 644 'netcdf.3'
> '/home/nicole/MD_AMBER/amber11/AmberTools/share/man/man3/netcdf.3'
> /usr/bin/install: cannot stat `netcdf.3': No such file or directory
> make[4]: *** [install-man3] Error 1
> make[4]: Leaving directory
> `/home/nicole/MD_AMBER/amber11/AmberTools/src/netcdf/src/libsrc'
> make[3]: *** [install-am] Error 2
> make[3]: Leaving directory
> `/home/nicole/MD_AMBER/amber11/AmberTools/src/netcdf/src/libsrc'
> make[2]: *** [install-recursive] Error 1
> make[2]: Leaving directory
> `/home/nicole/MD_AMBER/amber11/AmberTools/src/netcdf/src'
> make[1]: *** [/home/nicole/MD_AMBER/amber11/lib/libnetcdf.a] Error 2
> make[1]: Leaving directory
> `/home/nicole/MD_AMBER/amber11/AmberTools/src/ptraj'
> make: *** [serial] Error 2
>
> While it configured successfully, I could not fix this problem after
> entering
> sudo make install.
> Does that mean there's some problem finding "netcdf.3" and a command
> called "m4"
> sis not work? I did find netcdf.3 in amber11/AmberTools/include
> directory, and
> am very confused. Perhaps I just didn't understand the error messages.
> Could
> you please help me out here?
>
> Thank you so much. I really really appreciate for any suggestions.
>
> Sincerely,
> Nicole Lee
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Received on Tue May 31 2011 - 12:30:03 PDT
