Hi,
Given the command:
secstruct :1-10 out dssp.dat
an additional file, dssp.dat.sum will be written which gives SS
averages over the course of the trajectory. See the AmberTools manual
section on ptraj commands for more details.
-Dan
On Mon, May 30, 2011 at 3:21 PM, Alessio Atzori <a5964384a.gmail.com> wrote:
> Dear Amber users,
>
> I'm trying to perform a secondary structure analysis of a peptide using
> secstruct.
> Is it possible to get information about the average secondary structure of
> the peptide using secstruct?
> Moreover anyone could suggest me a protocol or a tutorial to perform an
> exhaustive secondary structure analysis?
>
> Thanking you
>
> AZ
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Received on Mon May 30 2011 - 13:00:02 PDT
