Re: [AMBER] x86_64-alt-linux-gcc: cgen.o: No such file or directory make[1]: Leaving directory `/home/voronkov/amber11/AmberTools/src/nab' make: *** [serial] Error 2

From: Andrew Voronkov <drugdesign.yandex.ru>
Date: Thu, 26 May 2011 23:59:14 +0400

Yes, there is error with make nabonly after make clean. Maybe I can install it without nab? I actually need mmpbsa.py only.

[voronkov.t60-2 src]$ x86_64-alt-linux-gcc: cgen.o: No such file or directory
-bash: x86_64-alt-linux-gcc:: command not found
[voronkov.t60-2 src]$ make[1]: *** [nab2c] Error 1
-bash: make[1]:: command not found
[voronkov.t60-2 src]$ make[1]: Leaving directory `/home/voronkov/amber11/AmberTools/src/nab'
> make: *** [nabonly] Error 2
> [voronkov.t60-2 src]$


Sincerely yours,
Andrey

25.05.2011, 13:30, "David A. Case" <case.biomaps.rutgers.edu>:
> On Wed, May 25, 2011, Andrew Voronkov wrote:
>
>> š(cd nab && make install )
>> šmake[1]: Entering directory `/home/voronkov/amber11/AmberTools/src/nab'
>> šgcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ ššššš\
>> ššššššššššššššššš-o nab2c nab2c.o cgen.o checkexpr.o dumpnode.o errormsg.o fixexpr.o genavscode.o node.o symbol.o y.tab.o
>> šx86_64-alt-linux-gcc: cgen.o: No such file or directory
>
> This looks like you have tried (and failed?) earlier to compile nab in the
> same directory. šWe need more history on what you did, but the simple thing
> to try is to type "make clean" followed by "make nabonly" (do this in
> $AMBERHOME/AmberTools/src.)
>
> ...good luck....dac
>
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Received on Thu May 26 2011 - 13:00:03 PDT
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