Hello sir,
I have got the following error messege while loading sustiva.pdb in antechamber.....[root.localhost ~/souvik]# $AMBERHOME/exe/antechamber -i sustiva.pdb -fi pdb -o sustiva.prepin -fo prepi -c bcc -s 2Running: /usr/local/amber9/exe/bondtype -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac -j fullRunning: /usr/local/amber9/exe/atomtype -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaffTotal number of electrons: 160; net charge: 0Running: $AMBERHOME/exe/divconforrtl: severe (174): SIGSEGV, segmentation fault occurredImage PC Routine Line Source divcon 08336186 Unknown Unknown Unknowndivcon 081F4BE0 Unknown Unknown Unknowndivcon 081BE548 Unknown Unknown UnknownError: cannot run "$AMBERHOME/exe/divcon" of bcc() in charge.c properly, exitI have already untarred the AmberTools 1.5 tar file and also compiled openmpi-1.4 tar file which is needed for installation.Please su
ggest me where the problem lies and how can I solve it.
regards,
Souvik Sur
Ph. D. Student
Department Of Chemistry
University Of Delhi
India
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Received on Fri May 06 2011 - 05:30:03 PDT
