Dear Amber developers and users,
I am doing MD simulations for human CycC almost exactly following the steps in the tutorial 3 (section 1-6) using Amber 11. I conducted H bond analysis and obtained analyse_hbond.out (
http://ambermd.org/tutorials/basic/tutorial3/section6.htm).
No H-bonds were detected by this analysis, but I am not sure about this result.
The analyse_hbond.out is attached.
My question is: can I say no H-bonds or some errors due to my lack of experience in MD simulation?
Thanks for your time!
Wu
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Received on Mon May 30 2011 - 05:30:02 PDT
