Many thanks for all the suggestions!
Indeed, the upgrade to GNU Fortran (GCC) 4.1.2 20080704 made all the problems to vanish and also with the further compilation of Amber11 went smooth.
Best regards,
Anna
-----------
Anna Reymer,
Physical Chemistry,
Department of Chemical and Biological Engineering
Chalmers University of Technology
Kemivägen 10
SE-412 96 Gothenburg
Sweden
________________________________________
From: Bruno Rodrigues [bbrodrigues.gmail.com]
Sent: 29 May 2011 22:30
To: AMBER Mailing List
Subject: Re: [AMBER] problems with AmberTools 1.5 compilation
I had problems with 4.4. A downgrade to 4.2 helped me. However, be
careful to don't mess up the versions (I did it!). The way to check
which version is working is:
gcc -v
and gfortran -v
they should be within the same version.
On 5/29/11, case <case.biomaps.rutgers.edu> wrote:
> On Sun, May 29, 2011, Anna Reymer wrote:
>>
>> _safemem.f:742: internal compiler error: Segmentation fault
>>
>> I suppose the problem is with the complier, but I am not sure.
>> The compiler I am using is:
>> GNU Fortran 95 (GCC) 4.1.2 20070115 (SUSE Linux)
>
> Upgrading to gcc 4.4 or higher will probably help, although I don't recall
> seeing this error before with gcc 4.1.2. Nevertheless, Amber really requres
> a
> more recent compiler, so upgrading is certainly a good thing to try.
>
> ....dac
>
>
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
--
Bruno Barbosa Rodrigues
PhD Student - Physics Department
Universidade Federal de Minas Gerais - UFMG
Belo Horizonte - Brazil
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Received on Mon May 30 2011 - 04:30:02 PDT
