Re: [AMBER] error in protein miniminisation

From: Ben Roberts <ben.roberts.geek.nz>
Date: Fri, 13 May 2011 09:06:48 -0400

Hi Dhilip,

On 13/5/2011, at 5:17 a.m., dhilip kumar ramalingam wrote:

> Hi all
> How to solve this error
> [nobel3:03912] *** Process received signal ***
> [nobel3:03912] Signal: Segmentation fault (11)
> [nobel3:03912] Signal code: Address not mapped (1)
> [nobel3:03912] Failing at address: 0x10680f29c
> [nobel3:03912] [ 0] /lib64/libc.so.6 [0x31862301b0]
> [nobel3:03912] [ 1] sander.MPI(rgroup_+0x1078) [0x515314]
> [nobel3:03912] [ 2] sander.MPI(mdread2_+0xa575) [0x4c6104]
> [nobel3:03912] [ 3] sander.MPI(sander_+0xb6b) [0x49ec57]
> [nobel3:03912] [ 4] sander.MPI(MAIN__+0x1264) [0x499ee8]
> [nobel3:03912] [ 5] sander.MPI(main+0xe) [0x629c5e]
> [nobel3:03912] [ 6] /lib64/libc.so.6(__libc_start_main+0xf4) [0x318621d8b4]
> [nobel3:03912] [ 7] sander.MPI [0x41c249]
> [nobel3:03912] *** End of error message ***
> mpiexec noticed that job rank 0 with PID 3912 on node nobel3 exited on
> signal 11 (Segmentation fault).

This is not enough information for us to help you. What kind of calculation were you trying to run at the time, and are there any errors or warnings reported in your mdout file?

Regards,
Ben

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Received on Fri May 13 2011 - 06:30:02 PDT
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