Hi,
Thanks for the reply.
My NetCDF configure did succeed,
with $AMBERHOME/AmberTools/src/netcdf_config.log exactly like you wrote,
without error messages.
I also have
NETCDF=netcdf.mod
NETCDFLIB=$(LIBDIR)/libnetcdf.a
in my $AMBERHOME/AmberTools/src/config.h, followed by:
PNETCDF=no
PNETCDFLIB=
I know I shouldn't have to do any extra linking or copying, but I just
wanted to try and see if it helped (as I didn't have any indications of
something else having gone wrong).
I will try and install both AmberTools 1.5 and AMBER 11 again, in a clean
directory.
Thanks,
Marc
On 24 May 2011 12:53, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Hi, it sounds like your netcdf might not have configured properly. My
> comments are below:
>
> On Tue, May 24, 2011 at 6:11 AM, Marc van der Kamp
> <marcvanderkamp.gmail.com> wrote:
> > When doing 'make serial', I first got the following error:
> >
> > cp ../../AmberTools/src/netcdf/include/*.mod .
> > cp: cannot stat `../../AmberTools/src/netcdf/include/*.mod': No such file
> or
> > directory
> > make[1]: *** [netcdf.mod] Error 1
> >
> > It turned out that $AMBERHOME/AmberTools/src/netcdf/include didn't exist,
>
> When you ran "$AMBERHOME/AmberTools/src/configure" did you get a
> message that "NetCDF configure succeeded"? Check near the end of
> $AMBERHOME/AmberTools/src/netcdf_config.log for any error messages. It
> should look something like:
>
> ...
> config.status: creating f90/Makefile
> config.status: creating examples/Makefile
> config.status: creating examples/C/Makefile
> config.status: creating examples/CDL/Makefile
> config.status: creating examples/CXX/Makefile
> config.status: creating examples/F90/Makefile
> config.status: creating examples/F77/Makefile
> config.status: creating config.h
> config.status: creating fortran/nfconfig1.inc
> config.status: executing depfiles commands
> ...
>
> Also, check your $AMBERHOME/AmberTools/src/config.h file. You should
> have two lines in it that read:
>
> NETCDF=netcdf.mod
> NETCDFLIB=$(LIBDIR)/libnetcdf.a
>
> > So I did 'make clean', and then made
> > the $AMBERHOME/AmberTools/src/netcdf/include directory with simlinks to
> > the $AMBERHOME/AmberTools/include/*mod files.
>
> You shouldn't have to do any extra linking or copying. At this point I
> would start with a clean directory, apply the bugfixes, the run
> configure and check all the output before attempting to make.
>
> -Dan
>
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>
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Received on Tue May 24 2011 - 05:30:02 PDT
