Dear Sir,
thank you sir for your kind response, i have downloaded the AmberTools 1.5 from your given site and also untarred it and run it as written in the direction web page but still antechamber is not running properly as i took the example of sustiva.pdb file for practice, can you please send me the command lines by which i can run the tools properly, and also tell me if there any need of any compiler for it as i early installed openmpi-1.5 file for installing Amber9 in my system.please reply as early as possible.
regards,
Souvik Sur
Ph. D. Student
Department Of Chemistry
University Of Delhi
India
> From: psn.berkeley.edu
> To: amber.ambermd.org
> Date: Mon, 2 May 2011 22:38:02 -0700
> Subject: Re: [AMBER] Hardwares requirement
>
> Hi Souvik,
>
> Not sure what you're looking at, but here's the link: http://ambermd.org/AmberTools-get.html
>
> Just fill out the form and you're set.
>
> Best,
>
> Paul
>
>
> On May 2, 2011, at 10:31 PM, souvik sur wrote:
>
> >
> > dear sir,
> > i see it in the given weblink but can you please send me the link
> > fom where i can freely download the "Amber tools 1.5".actually it is
> > not free accessible.
> > regards,
> > Souvik Sur
> > Ph. D. Student
> > Department Of Chemistry
> > University Of Delhi
> > India
> >
> >
> >
> >
> >> Date: Mon, 2 May 2011 13:11:29 +0200
> >> From: jason.swails.gmail.com
> >> To: amber.ambermd.org
> >> Subject: Re: [AMBER] Hardwares requirement
> >>
> >> There is ample information and benchmarks on the amber website (
> >> http://ambermd.org) and in the manual.
> >>
> >> You should be able to figure it out from there.
> >>
> >> HTH,
> >> Jason
> >>
> >> On Mon, May 2, 2011 at 9:38 AM, souvik sur <souviksur.hotmail.com>
> >> wrote:
> >>
> >>>
> >>> Hello sir,
> >>> I have amber 9 and working on molecular dynamics, i want to run
> >>> simulation
> >>> job for my compounds upto 50ns, can you please suggest me the
> >>> required
> >>> configuration of my computer, i use to run simulation job of my
> >>> compound
> >>> which has around 40,000 atoms in its structure,please suggest me.I
> >>> am
> >>> waiting for your reply.
> >>> regards,
> >>> Souvik Sur
> >>> Ph. D. Student
> >>> Department Of Chemistry
> >>> University Of Delhi
> >>> India
> >>>
> >>>
> >>>
> >>> _______________________________________________
> >>> AMBER mailing list
> >>> AMBER.ambermd.org
> >>> http://lists.ambermd.org/mailman/listinfo/amber
> >>>
> >>
> >>
> >>
> >> --
> >> Jason M. Swails
> >> Quantum Theory Project,
> >> University of Florida
> >> Ph.D. Candidate
> >> 352-392-4032
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
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Received on Wed May 04 2011 - 07:00:04 PDT
