Daniel,
Thanks. It seems that you were right. With your file, compilation of the
Frame.cpp code works, but that of other codes fail with the same errors.
For some reason, when I tried from scratch (without the file from you),
with the bugfixes applied the compilation worked fine...
So, I guess that I overlooked and applied the bugfixes twice in my first
attempt ...
Vlad
On 05/20/2011 09:32 PM, Daniel Roe wrote:
> Hi,
>
> I don't see this error using the same system setup (intel 11, MKL 10
> etc). It looks like you may have tried to apply bugfix 1 multiple
> times. The patch program should detect previously applied patches but
> it is not always successful. I am attaching a clean AT1.5 version of
> Frame.cpp (patched); try replacing
> $AMBERHOME/AmberTools/src/cpptraj/src/Frame.cpp with this one and see
> if compilation works. Alternatively, you can start from a clean
> codebase.
>
> -Dan
>
> On Fri, May 20, 2011 at 10:56 AM, Vlad Cojocaru
> <vlad.cojocaru.mpi-muenster.mpg.de> wrote:
>> I should probably add that I used MKL 10.2, the Linux OS, kernel 2.6.32
>> Also, amber tools 1.4 compiles without problems in the same environment.
>>
>> The problems appear to be in the new code of cppptraj
>>
>> Vlad
>>
>> On 05/20/2011 03:35 PM, Vlad Cojocaru wrote:
>>> Dear Ambers,
>>>
>>> I am trying to compile amber tools 1.5 with the intel compiler
>>> (11.1.059) on a x86_64 platform.
>>> However, I am getting the errors attached.
>>>
>>> The compilation works fine with gcc 4.3.4
>>>
>>> Any ideas about potential problems would be appreciated
>>>
>>> Regards
>>> Vlad
>>>
>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>> --
>> Dr. Vlad Cojocaru
>> Max Planck Institute for Molecular Biomedicine
>> Department of Cellular and Developmental Biology
>> Roentgenstrasse 20
>> 48149 Muenster, Germany
>> tel: +49-251-70365-324
>> fax: +49-251-70365-399
>> email: vlad.cojocaru[at]mpi-muenster.mpg.de
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>>
>> _______________________________________________
>> AMBER mailing list
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>> http://lists.ambermd.org/mailman/listinfo/amber
--
Dr. Vlad Cojocaru
Max Planck Institute for Molecular Biomedicine
Department of Cellular and Developmental Biology
Roentgenstrasse 20
48149 Muenster, Germany
tel: +49-251-70365-324
fax: +49-251-70365-399
email: vlad.cojocaru[at]mpi-muenster.mpg.de
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Received on Sat May 21 2011 - 03:00:02 PDT
