Hi Jason,
Thanks for your suggestion.
regards
setyanto
On Thu, Apr 28, 2011 at 7:36 PM, Jason Swails <jason.swails.gmail.com>wrote:
> Hello,
>
> On Thu, Apr 28, 2011 at 4:47 AM, setyanto md <stwahyudi.md.gmail.com>
> wrote:
>
> > Dear Martin,
> >
> > I configured AmberTools using : ./configure gnu
> >
> > I am inspired by your question about AMBERHOME environment, since I have
> > amber10, so my AMBERHOME environment is
> > : export AMBERHOME=/usr/local/amber10. When unpack AmberTools 1.5 it was
> > create amber11 folder. I think this is my problem. I forgot to move
> > AmberTools folder from /usr/local/amber11 to /usr/local/amber10.
> >
>
> In general, you should NOT do this. Keep AmberTools 1.5 in its own
> directory, and set AMBERHOME to /usr/local/amber11, since only AmberTools
> programs make use of AMBERHOME.
>
> You should also add /usr/local/amber11/bin to your PATH so that you can
> find
> both Amber and AmberTools programs. So in your .bashrc you should have
> something like
>
> export AMBERHOME=/usr/local/amber11
> export PATH=$PATH\:$AMBERHOME/bin\:/usr/local/amber10/bin
>
> Keep in mind that it's important to have the AMBERHOME/bin come before
> /usr/local/amber10/bin in your PATH, since that way your shell will find
> the
> AmberTools binaries from /usr/local/amber11/bin before the ones from
> amber10.
>
> HTH,
> Jason
>
>
> >
> > I just re-install, and now I am move AmberTools folder from
> > /usr/local/amber11 to /usr/local/amber10 (first I just rename previously
> > AmberTools folder in /usr/local/amber10 with other name "AmberTools-10").
> >
> > After re-installation, in my linux terminal i was check MCPB by typing >
> > MCPB. and great !!!, it showed the Message about MCPB.
> >
> > Thanks Martin to remind me about AMBERHOME environment.
> >
> > regards,
> >
> > setyanto
> >
> >
> > On Wed, Apr 27, 2011 at 2:13 PM, Martin Peters <martin.b.peters.me.com
> > >wrote:
> >
> > > Hi Setyanto,
> > >
> > > How did you configure AmberTools? Can you send us the command you
> used?
> > >
> > > Did you receive any error messages during the compilation?
> > >
> > > Do you have the environment variable 'AMBERHOME' set up correctly?
> What
> > > programs are installed in the bin directory?
> > >
> > > Regards,
> > >
> > > Martin.
> > >
> > > On 27 Apr 2011, at 07:28, setyanto md wrote:
> > >
> > > > Dear Amber User and Developer,
> > > >
> > > > I just install AmberTools 1.5, but I am using Amber 10.
> > > > I'll try to find MCPB by using commad : MCPB in my terminal. But
> > > > unfortunately there no commands for MCPB.
> > > >
> > > > Is this because I am using Amber 10 or MTK++ cannot be installed ?
> > > >
> > > > Thank you very much.
> > > >
> > > > regards
> > > >
> > > > setyanto
> > > >
> > > > Lab Biokimia Komputasi ITB
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> > >
> > >
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> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
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Received on Wed May 04 2011 - 01:00:02 PDT
