Hi dac,
Thanks for the patch. I used the patch on the unpatched version of files.
I get a new error now,
a - wallclock.o
ranlib arpack.a
mv arpack.a /home/common/packages/amber11/lib
make[2]: Leaving directory
`/home/common/packages/amber11/AmberTools/src/arpack'
gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o main.o
main.c
gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rdparm.o
rdparm.c
gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o dispatch.o
dispatch.c
gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o help.o
help.c
gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o utility.o
utility.c
gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o second.o
second.c
gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o io.o io.c
io.c:782:5: error: conflicting types for ‘gzipFileSize’
io.c:681:15: note: previous definition of ‘gzipFileSize’ was here
io.c:814:5: error: conflicting types for ‘bzip2FileSize’
io.c:728:15: note: previous definition of ‘bzip2FileSize’ was here
io.c:840:5: error: conflicting types for ‘zipFileSize’
io.c:755:15: note: previous definition of ‘zipFileSize’ was here
make[1]: *** [io.o] Error 1
make[1]: Leaving directory
`/home/common/packages/amber11/AmberTools/src/ptraj'
make: *** [serial] Error 2
What could this be due to?
Please Advice.
Vivek
On Mon, May 30, 2011 at 7:43 PM, case <case.biomaps.rutgers.edu> wrote:
> On Mon, May 30, 2011, Vivek Shankar Bharadwaj wrote:
> >
> > escf = escf + pm6_correction()
> > 1
> > Error: Function 'pm6_correction' at (1) has no IMPLICIT type
>
> OK: my bad. The sqm routines that ship with AmberTools1.5 are actually
> those
> that were present in Amber11, not our most recent ones.
>
> You can try the attached patch (fingers crossed; use the files before you
> applied the previous patch I posted). But I'm hoping Andy or someone
> familier
> with sqm will vet this to see if it both makes sense, and is consistent
> with
> current code.
>
> Thanks for the report....dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue May 31 2011 - 20:00:02 PDT
