Dear Amber Users,
I made a solvent box using xleap .
I saved the prmtop and inpcrd files and equilibrated this at constant
pressure .I used the restrt file after this reaches the desired density.
Converted into pdb file .I use setbox to make the box and saved it as .off
file .
I edited the off file for correct dimensions as in my restrt file.
Now when I load into leap and visualize , it appears as though some of the
residues are out of the box dimensions.
Can anyone help me out here .
Thanks
John
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Received on Thu May 05 2011 - 11:30:02 PDT
