Re: [AMBER] system extended beyond the virtual box

From: David A. Case <case.biomaps.rutgers.edu>
Date: Wed, 25 May 2011 03:15:43 -0400

On Mon, May 23, 2011, Qian Wang wrote:

>
> When I used Amber10 to simulate protein folding, I obtained the
> following error message:
> system extended beyond the virtual box

For non-periodic systems where the conformation or location of the system
changes a lot, setting igb=6 avoids the problem of having a virtual box
assembled around the system, and hence avoiding the error listed above.

....dac


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Received on Wed May 25 2011 - 00:30:02 PDT
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