Re: [AMBER] new lib loaded, but atom types are not recognized

From: Thomas Cheatham III <tec3.utah.edu>
Date: Mon, 9 May 2011 11:27:11 -0600 (Mountain Daylight Time)

> I created some new lib, loaded them before loading the molecule, but I still
> got FATAL errors of unrecognized atome types.
>
> *> loadoff hiz.lib
> Loading library: ./hiz.lib
> Loading: hiz

I think you want the residue/unit name to be HIZ not hiz, i.e. all the
residue names to be all capitals as LEaP distinguishes case. I would edit
the libraries to put the lower case to upper case for hiz, cym, hio, hia,
...


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Received on Mon May 09 2011 - 10:30:04 PDT
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