On Sun, May 22, 2011, Andre Serobian wrote:
>
> To recap, I am getting the following error after make install:
>
> In file included from sff.c:2278:
> mm_options.l: In function ‘mmolex’:
> mm_options.l:31: error: ‘hcp_h’ undeclared (first use in this function)
> mm_options.l:31: error: (Each undeclared identifier is reported only once
> mm_options.l:31: error: for each function it appears in.)
> mm_options.l:139: error: ‘cutres’ undeclared (first use in this function)
> make[1]: *** [sff.o] Error 1
> make[1]: Leaving directory `/usr/local/amber11/AmberTools/src/sff'
> make: *** [serial] Error 2
>
> To give more information, I am using the following:
> ./configure gnu
> CentOS 5.6 64bit
> flex version 2.5.4
> gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-50)
Did you follow the advice in
http://archive.ambermd.org/201105/0150.html?
That is, make sure to get rid of any old lex*.c files. Did you unpack
AmberTools1.5 into a fresh directory, or is this an installation on top of
AmberTools 1.4?
....dac
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Received on Wed May 25 2011 - 08:00:03 PDT
