Hi,
it is hard to say what could be wrong from the little info you give. Are
you sure it's not just an imaging problem?
How did you set the periodicity in your input, what did happen and what do
you think should have happened?
Thomas
On Thu, May 19, 2011 5:43 am, hanlu0366 wrote:
>
> Dear sir,
>
> Now I am simulating a molecular crystal ,but after MD ,the structure of
> cell (supercell) is disintegrated . I think it is a cause lacking a
> reasonable boundary condition . I want to inqurie that how to estiblish a
> periodic box in Amber .
>
> Yours
> Sincerely
> 2011-5-19
>
>
> 2011-05-19
>
>
>
> hanlu0366
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
Dr. Thomas Steinbrecher
formerly at the
BioMaps Institute
Rutgers University
610 Taylor Rd.
Piscataway, NJ 08854
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Received on Thu May 19 2011 - 04:00:03 PDT
